Software List

This is a list of all currently installed modules on Rivanna.  Modules should be searched by name only; tags and detailed descriptions will be available with the major upgrades to Rivanna mid-October.

Module Version Tag Description
abinit 8.0.8b

Built with openmpi, gcc

abinit 8.2.2

Built with openmpi, intel

amber 10
anaconda 2
2.2
2.4
anaconda2 4.0.0
anaconda3 2.4.1
ansys 14
15(default)
17
17.2
18
ansysem 16.1
armadillo 7.800.1
arpack 96
asciidoc 8.6.9
asc_meme devel
atlas 3.10.2
baselibs 4.3.2

Built with gmp

baselibs 0.12.2
0.16.1

Built with isl

baselibs 0.8.1

Built with mpc

baselibs 2.4.2

Built with mpfr

bazel 1
bedops 2.4.26
bedtools2 2
berkeley_db 6.1.19
bicseq2-norm 0.2.4
bicseq2-seg 0.7.2
bioperl 1.6.923
bismark 0.17.0
blas 3.6.0
BLAS 3.5.0
blast 2.2.22
blcr 0.8.5
blender 2.7
2.78
boost 1.55.0
boost 1.55.0

Built with MPI, openmpi

bowtie2 2.1.0
2.2.3
bwa 0.7.11
bzip2 1.0.6
cairo 1.14.2
cd-hit 3.1.1
celera_wgs 8.3rc2
cellprofiler 2.2.0
cesm 1.2.2

Built with intel-16.0-openmpi-1.10.2

CESM 1.2.2
clearcut 1.0.9
clhep 2.3.4.3
cmake 2.8.12-2
3.3.2
3.6.2
codeblocks 13.2
coreutils 8.25
cpuset 1.5.6
cuda 6.0.37
cudnn 5.1
cuDNN 5.1
cufflinks 2.2.2
curl 7.26
7.47.1
7.47.1_test
cushaw 3.0.3
danpos 2.2.2
ddd 3.3.12
eclipse luna
eigen 3.2.2
eigensoft 6.0.1
emacs 25.2
epacts 3.2.6
espresso 5.1.1

Built with mvapich2, intel

espresso 5.1.1
5.4.0

Built with openmpi, 1.10.2, intel_16.0

espresso 5.4.0

Built with openmpi, 1.8.4, intel

espresso 5.4.0

Built with openmpi, intel

fasta 36.3.8c
fastqc 0.11.5
fastx_toolkit 0.0.14
ffmpeg 2.3.1
fftw 2.1.5
3.3.4
fgsl 1
fiji 1.51.h
fluent 15.0.7
freebayes 0.9.10
freetype 2.4.0
fsl 5.0.8
ftnchek 3.3.1
gaussian g03
g98
gcc 4.8.2
gcc 5.4.0
gdbm 1.13
gdl 0.95
geant4 10.03
geany 1.24.1
ghc 7.10.3
git 1.8.5.3
2.11.1
glew 2.0.0
glib 2.42.2
glib-dev 2.49.2
go 1.7.3
gparallel 20150622
gperf 3.0.4
grib_api 1.14.0
gromacs 5.0.2_dp-avx
5.0.2_dp-sse
5.0.2_dp-sse
5.0.2_sp-avx
5.0.2_sp-sse

Built with nompi, gcc

gromacs 5.0.2_dp-avx
5.0.2_dp-sse
5.0.2_dp-sse
5.0.2_sp-avx
5.0.2_sp-sse

Built with openmpi, gcc

GSAA 1.3
gsl 1.16
gsl2 2.3
gurobi 6.5.1
7.0.2
hadoop 2.7.1_large_hdfs
2.7.1_small_hdfs
hdf5 1.8.16

Built with mvapich2, gcc

hdf5 1.8.16

Built with mvapich2, intel

hdf5 1.8.16

Built with mvapich2, pgi

hdf5 1.10.1
18.16

Built with nompi, gcc

hdf5 1.8.16

Built with nompi, intel

hdf5 1.8.16

Built with nompi, pgi

hdf5 1.8.16

Built with openmpi, gcc

hdf5 1.8.16

Built with openmpi, intel

hdf5 1.8.16

Built with openmpi, intel_16.0

hdf5 1.8.16

Built with openmpi, pgi

hepmc 2.06.09

Built with gcc, 4.8.2

hepmc 2.06.09

Built with gcc, 5.4.0

HiC-Pro 2.7.8
hisat2 2.0.5
hpl 2.2

Built with mvapich2, intel

htmd 4.4.0
htslib 1.3
htslib 1.3.1
hwloc 1.11.1
idl 7.06
idl 8.3
ImageMagick 6.8.9-0
7.0.5-5
imsl 7.1
intel 13
14.0(default)
15
16
intelmpi 4.1.3.048
iozone 3.424
iperf 3.1
iperf aside
itensor 2.1.1
jags 4.0.0
jasper 1.900.0.1
1.900.1
java 1.6.0_30
1.7.0_67
1.8.0_111
1.8.0_45
jellyfish 1.1.11
julia 0.4.0
0.6.0
kraken 0.10.6
lammps 2/1/2014

Built with mvapich2, gcc

lammps 5/15/2015

Built with openmpi, gcc

lammps 2/1/2014
5/15/2015
2/16/2016
11/17/2016

Built with openmpi, intel

lapack 3.6.0
LEDA 6.3
libdrm 2.4.67
2.4.68
libevent 2.0.21
libevent-devel 2.1.5-beta
libffi 3.2.1
libgtextutils 0.7
libpciaccess 0.13.4
libpng 1.6.17
libva 1.7.0
libxcb 1.12
libxshmfence 1.1
likwid 3.1.1
llvm 3.8.0
lsopt 4.2
5.1.1
lstc 6.1.1
7.0.0
7.1.1
8.0.0
9.0.0
9.0.1
9.1.0
macaulay2 1.10.0.1
make 4.2
mathematica 10.2
11
9
matlab R2015a
R2016a(default)
R2017a
maven 3.3.9
meme 4.10.2

Built with openmpi, gcc

mesa 12.0.0
mothur 1.25.0
motif 2.3.4
mpc 1.0.2
mpfi 1.5.1
mpfr 3.1.2
mummer 3.23
muscle 3.8.31
mvapich2 2.1
mvapich2 1.9

Built with gcc

mvapich2 1.9

Built with intel

NAMD 2.9

Built with ibverbs-smp

ncbi-blast 2.2.29
ncl_ncarg 6.2.1
netcdf 4.4.0

Built with mvapich2, gcc

netcdf 4.4.0

Built with mvapich2, intel

netcdf 4.4.0

Built with nompi, gcc

netcdf 4.4.0

Built with nompi, intel

netcdf 4.4.0

Built with nompi, pgi

netcdf 4.4.0

Built with openmpi, gcc

netcdf 4.4.0

Built with openmpi, intel

netcdf 4.4.0

Built with openmpi, intel_16.0

netcdf 4.4.0

Built with openmpi, pgi

netperf 2.6.0
neuron 7.4

Built with openmpi, gcc

ngsplot 2.61
ntl 6.2.1
NWChem 6.5.revision26243

Built with intelmpi

openblas 0.2.1
openmpi 1.10.2
1.6.5
1.8.1
2.0.0
openmpi 1.8.4
2.0.0

Built with gcc

openmpi 1.10.2
2.0.0

Built with gcc, 5.4.0

openmpi 1.10.2
1.8.0
1.8.4

Built with intel

openmpi 1.8.4

Built with pgi

p7zip 16.02
pango 1.36.8
pcre 8.39
8.39_utf8
peakseq 1.31
perl 5.18.2
5.20.1
pgi 14.4
picard 2.6.0
pixman 0.32.6
plplot 5.11.1
psicode 4
pslib 0.4.5
psnap 1.2
python 2.7.6
3.4.0
qiime 1.9.1
qt 4.8.6
5.3.1
qumulo 1
qwt 6.1.2
R 3.2.1
3.2.1_tcltk
R 3.1.1
3.3.0
3.3.0_utf8
3.4.0

Built with openmpi

RAxML 7.3.0
8.1.20
rclone 1.33
rdp_classifier 2.2
relion 1.4
relion 1.4

Built with openmpi, gcc

RevoR 7.4
RNAcode 0.3
root 5.34.28
rs 3.1.0
rsem 1.2.31
rstudio 0.98
ruby 2.3.1
sambamba 0.6.6
samtools 0.1.19
1.3.1
sas 9.4
scalapack 2.0.2

Built with mvapich2, gcc

scalapack 2.0.2

Built with mvapich2, pgi

scalapack 2.0.2

Built with openmpi, gcc

scalapack 2.0.2

Built with openmpi, pgi

scons 2.5.0
siesta 4.1.b1

Built with openmpi, gcc

siesta 4.1.b1

Built with openmpi, intel_16.0

skampi 5.0.4
slatec 1992
slurm-drmaa 1.0.7
SOAPdenovo 2.04
spades 3.10.1
sparsehash 2.0.2
sprng 5
sra-tools 2.6.3
2.8.0
stacks 1.3
1.4
stata 12
stream 5.9
swift 3
swiftfs 0.4
szip 2.1
tcl 8.6.1
tensorflow 5.4

Built with nogpu, anaconda2, gcc

tk 8.6.1
tmux 1.9a
tophat 2.0.11
2.1.1
totalview 8.14
ucsc-tools 10/10/2016